This is a detailed reference for each analysis function in Celline. Each function has its own dedicated page with comprehensive documentation.

📚 Function Categories

🗄️ Data Management

• Add - Add accession ID to your project
• Download - Download data into your project
• SyncDB - Database synchronization

🧮 Data Processing

• Count - Count processing with Cell Ranger
• CreateSeuratObject - Create Seurat objects
• SetTranscriptome - Set transcriptome reference

🔬 Quality Control & Preprocessing

• Preprocess - Quality control and filtering

📊 Analysis & Visualization

• PredictCelltype - Cell type prediction
• BuildCellTypeModel - Build cell type prediction model
• Reduce - Dimensionality reduction
• Integrate - Data integration
• BatchCorrection - Batch effect correction

🔧 Utilities

• Info - System information display
• Initialize - Project initialization
• Interactive - Launch interactive web interface
• Job - Job management
• Bash - Execute bash commands

Quick Reference

Usage Pattern

All functions follow the same pattern:

      from celline import Project
from celline.functions.module_name import ClassName

# Create project
project = Project("./my-project")

# Create function instance
function = ClassName(parameters)

# Execute function
result = project.call(function)

    

Click on any function name above to see detailed documentation with parameters, examples, and usage instructions.